[A](ABCD)(a)
- Classes: Alpha and beta proteins (a+b)
- Folds: Nucleotidyltransferase
- Superfamilies: Nucleotidyltransferase
- Families: DNA polymerase beta-like
- Protein Domains: DNA polymerase lambda
- Species: Human (Homo sapiens) [TaxId: 9606]
PDB Entries
| PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | ||
|---|---|---|---|---|---|---|---|
| Amino Acid sequence | SCOPe Family Level | CATH Homology Level | |||||
| 1rzt |  |
[A](ABC) | [A](ABC) | [A](ABC) | 2.1 | EDO:1,2-ETHANEDIOL NA:SODIUM ION | |
| 1xsl | [A](ABC) | [A](ABC) | [A](ABC) | 2.3 | CAC:CACODYLATE ION MG:MAGNESIUM ION NA:SODIUM ION | ||
| 1xsn | |
[A](ABC) | [A](ABC) | [A](ABC) | 1.95 | 2DT:3___sq___-DEOXYTHYMIDINE-5___sq___-MONOPHOSPHATE D3T:2___sq___,3___sq___-DIDEOXY-THYMIDINE-5___sq___-TRIPHOSPHATE EDO:1,2-ETHANEDIOL MG:MAGNESIUM ION NA:SODIUM ION | |
| 1xsp | |
[A](ABC) | [A](ABC) | [A](ABC) | 2.2 | NA:SODIUM ION PPV:PYROPHOSPHATE | |
| 2bcq | [A](ABC) | [A](ABC) | [A](ABC) | 1.65 | EDO:1,2-ETHANEDIOL MG:MAGNESIUM ION NA:SODIUM ION PPV:PYROPHOSPHATE | ||
| 2gws | [A](ABC) | [A](ABC) | [A](ABC) | 2.4 | CAC:CACODYLATE ION CL:CHLORIDE ION EDO:1,2-ETHANEDIOL MG:MAGNESIUM ION NA:SODIUM ION | ||
| 2pfn | |
[A](ABC) | [A](ABC) | [A](ABC) | 1.9 | DUP:2___sq___-DEOXYURIDINE 5___sq___-ALPHA,BETA-IMIDO-TRIPHOSPHATE MG:MAGNESIUM ION NA:SODIUM ION | |
| 2pfo | |
[A](ABC) | [A](ABC) | [A](ABC) | 2 | DUP:2___sq___-DEOXYURIDINE 5___sq___-ALPHA,BETA-IMIDO-TRIPHOSPHATE EDO:1,2-ETHANEDIOL MG:MAGNESIUM ION MN:MANGANESE (II) ION NA:SODIUM ION | |
| 2pfp | |
[A](ABC) | [A](ABC) | [A](ABC) | 2.1 | DCP:2___sq___-DEOXYCYTIDINE-5___sq___-TRIPHOSPHATE MG:MAGNESIUM ION NA:SODIUM ION | |
| 2pfq | |
[A](ABC) | [A](ABC) | [A](ABC) | 2.1 | DCP:2___sq___-DEOXYCYTIDINE-5___sq___-TRIPHOSPHATE MG:MAGNESIUM ION MN:MANGANESE (II) ION NA:SODIUM ION PPV:PYROPHOSPHATE | |
| 3c5f | |
[A](ABC) | [A](ABC) | [A](ABC) | 2.25 | NA:SODIUM ION | |
| 3c5g | |
[A](ABC) | [A](ABC) | [A](ABC) | 2.2 | 2DT:3___sq___-DEOXYTHYMIDINE-5___sq___-MONOPHOSPHATE D3T:2___sq___,3___sq___-DIDEOXY-THYMIDINE-5___sq___-TRIPHOSPHATE EDO:1,2-ETHANEDIOL MG:MAGNESIUM ION NA:SODIUM ION | |
| 3hw8 | |
[A](ABC) | [A](ABC) | [A](ABC) | 1.95 | D3T:2___sq___,3___sq___-DIDEOXY-THYMIDINE-5___sq___-TRIPHOSPHATE EDO:1,2-ETHANEDIOL MG:MAGNESIUM ION NA:SODIUM ION | |
| 3mdc | [A](ABC) | [A](ABC) | [A](ABC) | 2 | GTF:2___sq___-DEOXY-2___sq___,2___sq___-DIFLUOROCYTIDINE 5___sq___-(TETRAHYDROGENTRIPHOSPHATE) MG:MAGNESIUM ION NA:SODIUM ION | ||
| 3mgh | |
[A](ABC) | [A](ABC) | [A](ABC) | 2.4 | NA:SODIUM ION | |
| 3mgi | |
[A](ABC) | [A](ABC) | [A](ABC) | 2.6 | D3T:2___sq___,3___sq___-DIDEOXY-THYMIDINE-5___sq___-TRIPHOSPHATE MG:MAGNESIUM ION NA:SODIUM ION | |
| 3pml | [A](ABC) | [A](ABC) | [A](ABC) | 2.6 | 1GC:2___sq___-DEOXY-5___sq___-O-[(R)-HYDROXY{[(S)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]METHYL}PHOSPHORYL]GUANOSINE MG:MAGNESIUM ION NA:SODIUM ION | ||
| 3pmn | [A](ABC) | [A](ABC) | [A](ABC) | 2.2 | 1GC:2___sq___-DEOXY-5___sq___-O-[(R)-HYDROXY{[(S)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]METHYL}PHOSPHORYL]GUANOSINE CL:CHLORIDE ION MG:MAGNESIUM ION MN:MANGANESE (II) ION NA:SODIUM ION | ||
| 3pnc | [A](ABC) | [A](ABC) | [A](ABC) | 2 | 1GC:2___sq___-DEOXY-5___sq___-O-[(R)-HYDROXY{[(S)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]METHYL}PHOSPHORYL]GUANOSINE MG:MAGNESIUM ION NA:SODIUM ION TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | ||
| 3upq | |
[A](ABC) | [A](ABC) | [A](ABC) | 1.95 | MN:MANGANESE (II) ION NA:SODIUM ION SO4:SULFATE ION ZAN:5___sq___-O-[(S)-HYDROXY{[(S)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]AMINO}PHOSPHORYL]ADENOSINE | |
| 3uq0 | |
[A](AB)(a) | [A](AB)(a) | [A](AB)(a) | 2.14 | CL:CHLORIDE ION EDO:1,2-ETHANEDIOL NA:SODIUM ION SO4:SULFATE ION | |
| 3uq2 | |
[A](ABC) | [A](ABC) | [A](ABC) | 2.25 | MG:MAGNESIUM ION NA:SODIUM ION PPV:PYROPHOSPHATE | |
| 4fo6 | |
[A](ABCD)(a) | [A](ABCD)(a) | [A](ABCD)(a) | 2.01 | CL:CHLORIDE ION F2A:2___sq___-DEOXY-5___sq___-O-[(S)-HYDROXY{[(S)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]METHYL}PHOSPHORYL]ADENOSINE MG:MAGNESIUM ION MN:MANGANESE (II) ION NA:SODIUM ION | |
| 4k4g | [A](ABC) | [A](ABC) | [A](ABC) | 2.15 | 1S0:4-AMINO-1-{2-DEOXY-5-O-[(R)-HYDROXY{[(S)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}PHOSPHORYL]-BETA-L-ERYTHRO-PENTOFURANOSYL}PYRIMIDIN-2(1H)-ONE ACT:ACETATE ION CA:CALCIUM ION CAC:CACODYLATE ION | ||
| 4k4h | [A](ABC) | [A](ABC) | [A](ABC) | 2.1 | 1RZ:LAMIVUDINE TRIPHOSPHATE ACT:ACETATE ION CA:CALCIUM ION | ||
| 4k4i | [A](ABC) | [A](ABC) | [A](ABC) | 2.25 | 1RY:[[(2R,5S)-5-(4-AZANYL-5-FLUORANYL-2-OXIDANYLIDENE-PYRIMIDIN-1-YL)-1,3-OXATHIOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL] PHOSPHONO HYDROGEN PHOSPHATE ACT:ACETATE ION CA:CALCIUM ION CAC:CACODYLATE ION | ||
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
